Generic RNA-Seq workflow
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Discovery and characterization of variance QTLs in human induced pluripotent stem cells
Normalization methods for RNA-Seq expression data in Python.
A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association bet...
HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq
Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data
Package for fetching metadata and downloading data from SRA/ENA/GEO
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
Alignment and antibody assembly pipelines for Croote et al. (Science, 2018)
RNA-Seq pipeline
SARS-CoV-2 analysis pipeline for short-read, paired-end illumina sequencing
A Snakemake workflow for Fermi-LAT data reduction
python programs / functions to help when setting up new projects using `data_buddy`
Hooks for setting up data-analysis projects
Code to process raw SNARE-seq ATAC reads
This repo contains code that is relevant for the analysis (Mapping, BAM qc, Variant Calling, Filt...