Generic RNA-Seq workflow
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A Snakemake workflow for Fermi-LAT data reduction
Code to process raw SNARE-seq ATAC reads
python programs / functions to help when setting up new projects using `data_buddy`
HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq
This repo contains code that is relevant for the analysis (Mapping, BAM qc, Variant Calling, Filt...
Alignment and antibody assembly pipelines for Croote et al. (Science, 2018)
RNA-Seq pipeline
Discovery and characterization of variance QTLs in human induced pluripotent stem cells
Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data
Package for fetching metadata and downloading data from SRA/ENA/GEO
SARS-CoV-2 analysis pipeline for short-read, paired-end illumina sequencing
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association bet...
Normalization methods for RNA-Seq expression data in Python.
Hooks for setting up data-analysis projects