Structural variation caller using third generation sequencing
OTHER License
Copy number caller for long read data including SNV utilization
A fast Python and command-line utility for extracting simple statistics against genome positions ...
BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
SARS-CoV-2 analysis pipeline for short-read, paired-end illumina sequencing
Effective selection of population size projection for construction of the site frequency spectrum...
Add biological annotations to variants in a given VCF file.
genes and genomes at your fingertips
Super sensitive mutation validator, uses sam/bam and vcf
Metagenomic species profiling with enhanced coverage of the human gut microbiome
Automated Multi-Locus Sequence Analysis phylogenetic tree construction software
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
Unified Human Gut Virome Catalog
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Alignment and antibody assembly pipelines for Croote et al. (Science, 2018)
Rapid determination of appropriate reference genomes.