Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models and training/task utilities. (ICLR 2024)
MIT License
create_example_batch
by @amorehead in https://github.com/a-r-j/ProteinWorkshop/pull/50
ProteinDataset
's process
method by @amorehead in https://github.com/a-r-j/ProteinWorkshop/pull/52
orientation
batching by @amorehead in https://github.com/a-r-j/ProteinWorkshop/pull/58
Full Changelog: https://github.com/a-r-j/ProteinWorkshop/compare/v0.2.4...v0.2.5
Published by a-r-j about 1 year ago
poetry
in README.md, and fix up docs by @amorehead in https://github.com/a-r-j/ProteinWorkshop/pull/35
Full Changelog: https://github.com/a-r-j/ProteinWorkshop/compare/v0.2.3...v0.2.4
Published by a-r-j about 1 year ago
overwrite
attributes in dataloaders by @a-r-j in https://github.com/a-r-j/ProteinWorkshop/pull/25
Full Changelog: https://github.com/a-r-j/ProteinWorkshop/compare/v0.2.2...v0.2.3
Published by a-r-j about 1 year ago
in_memory=True
data were not correctly formatted (#24)overwrite
argument for datamodules to users (#24)graphein
dependency to 1.7.3
(#24)Full Changelog: https://github.com/a-r-j/ProteinWorkshop/compare/v0.2.1...v0.2.2
Published by a-r-j about 1 year ago
Full Changelog: https://github.com/a-r-j/ProteinWorkshop/compare/v0.2.0...v0.2.1
Published by a-r-j about 1 year ago
Initial public release with PyPI distribution and CLI.