inStrain

AlphaMissenseCheck

See how pathogenic your mutations are according to AlphaMissense based on your 23andme raw data

automlsa2

Automated Multi-Locus Sequence Analysis phylogenetic tree construction software

covid19

SARS-CoV-2 analysis pipeline for short-read, paired-end illumina sequencing

pybedtools

Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")

bs3

BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.

miseq-16S-pipeline

HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq

PyReQTL

A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association bet...

simrrls

Simulate raw restriction-site associated DNA fastq files

metaseq

Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data

redundans

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

demuxalot

Reliable, scalable, efficient demultiplexing for single-cell RNA sequencing

pca-on-genotypes

ngs-tools

Miscellaneous tools for genomics

binf-scripts

A collection of useful bioinformatics scripts.