Bioinformatics program inStrain
MIT License
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
See how pathogenic your mutations are according to AlphaMissense based on your 23andme raw data
Reliable, scalable, efficient demultiplexing for single-cell RNA sequencing
SARS-CoV-2 analysis pipeline for short-read, paired-end illumina sequencing
Simulate raw restriction-site associated DNA fastq files
Automated Multi-Locus Sequence Analysis phylogenetic tree construction software
HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq
Miscellaneous tools for genomics
A collection of useful bioinformatics scripts.
BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association bet...
Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")
Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data