Bioinformatics program inStrain
MIT License
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Published by MrOlm about 4 years ago
Numerous improvements over inStrain version 1.2, mainly related to improvements in runtime speed, RAM usage, output clarity, logging output, and code refactoring for clarity. See CHANGELOG for details.
A collection of useful bioinformatics scripts.
See how pathogenic your mutations are according to AlphaMissense based on your 23andme raw data
SARS-CoV-2 analysis pipeline for short-read, paired-end illumina sequencing
BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
Simulate raw restriction-site associated DNA fastq files
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
Miscellaneous tools for genomics
A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association bet...
Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")
HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq
Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data
Automated Multi-Locus Sequence Analysis phylogenetic tree construction software
Reliable, scalable, efficient demultiplexing for single-cell RNA sequencing