Structural variation caller using third generation sequencing
OTHER License
Full Changelog: https://github.com/fritzsedlazeck/Sniffles/compare/v2.3.3...v2.4
Published by hermannromanek 6 months ago
Bugfixes to make sure sniffles shuts down properly.
Full Changelog: https://github.com/fritzsedlazeck/Sniffles/compare/v2.3.2...v2.3.3
Published by lfpaulin 7 months ago
manage the Sniffles2Exit exception in order to not have --version
and --help
trowing an exit code 1 which made conda not accept sniffles v2.3.1
Full Changelog: https://github.com/fritzsedlazeck/Sniffles/compare/v2.3.1...v2.3.2
Published by lfpaulin 7 months ago
Bug fixes that prevented pip installation to work and thus conda was unable to build and release
Full Changelog: https://github.com/fritzsedlazeck/Sniffles/compare/v2.3...v2.3.1
Published by hermannromanek 7 months ago
This release includes new features for multisample calling and some restructuring of the codebase to facilitate easier development in the future.
New features:
Multisample calling for large input sets
Sniffles multiprocessing code has undergone a major rewrite with focus of enabling multisample calling for a large number of input files. To support this, the new optional dependency psutil can be installed along with sniffles.
Using alignments for multisample calling
Alignments can be used to improve separation of variants in multisample calling. This uses the new optional dependency edlib and can be tweaked with the new argument --combine-pctseq
defaulting to 0.7.
Required Python version has been updated to Python 3.10.
Published by lfpaulin over 1 year ago
This release includes a number of updated implementation, bug fixes and usability improvements.
--non-germline
has been updated to --mosaic
--bnd-min-split-length
and --qc-bnd-filter-strand
)Published by smolkmo over 2 years ago
This release includes a number of minor bugfixes and usability improvements.
Published by smolkmo over 2 years ago
In comparison to 2.0.2 a number of improvements to multi-sample mode were added:
Published by smolkmo over 2 years ago
This is a major update to Sniffles v2 which includes:
Published by fritzsedlazeck over 4 years ago
Multiple improvements including:
-) Genotype prediction
-) Report of strand biases per allele
-) Higher sensitivity on low supported alleles
-) Improved forced calling
Published by fritzsedlazeck over 5 years ago
Published by fritzsedlazeck about 6 years ago
Published by fritzsedlazeck over 6 years ago
Published by fritzsedlazeck almost 7 years ago
--report_seq : Reports the sequences of Indels in the VCF output
--min_homo_af: Adapt the threshold to infer a homozygous variant
--min_het_af: Adapt the threshold to infer a heterozygous variant
--Ivcf: Enabling Recalling/force calling given a VCF file.
Published by fritzsedlazeck about 7 years ago
Published by fritzsedlazeck over 7 years ago
Published by fritzsedlazeck over 7 years ago
Published by fritzsedlazeck over 7 years ago