accessory scripts for processing varscan somatic/copynumber outputs.
MIT License
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See how pathogenic your mutations are according to AlphaMissense based on your 23andme raw data
Add biological annotations to variants in a given VCF file.
Single-cell analysis in Python. Scales to >1M cells.
Community-curated list of software packages and data resources for single-cell, including RNA-seq...
BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
Load numpy arrays and HDF5 files from VCF (variant call format)
Super sensitive mutation validator, uses sam/bam and vcf
Convenient plotting functions for working with variant call data.
Reliable, scalable, efficient demultiplexing for single-cell RNA sequencing
BabelScan is a format independent data structure for holding different types of data from a scan ...
Alignment and antibody assembly pipelines for Croote et al. (Science, 2018)
SARS-CoV-2 analysis pipeline for short-read, paired-end illumina sequencing