varscan_accessories

accessory scripts for processing varscan somatic/copynumber outputs.

MIT License

Stars

Ecosystems: Python

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BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.

Alignment and antibody assembly pipelines for Croote et al. (Science, 2018)

Load numpy arrays and HDF5 files from VCF (variant call format)

Convenient plotting functions for working with variant call data.

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Single-cell analysis in Python. Scales to >1M cells.

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Add biological annotations to variants in a given VCF file.

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